{ "_id": "6a1141b0acfb0bcc41ce68f3", "Package": "PUlasso", "Type": "Package", "Title": "High-Dimensional Variable Selection with Presence-Only Data", "Version": "3.2.6", "Date": "2026-2-11", "Authors@R": "c(person(\"Hyebin\", \"Song\", role = c(\"aut\", \"cre\"),\nemail = \"hps5320@psu.edu\"),\nperson(\"Garvesh\", \"Raskutti\", role=\"aut\",email=\"raskutti@stat.wisc.edu\"))", "Description": "Efficient algorithm for solving PU (Positive and\nUnlabeled) problem in low or high dimensional setting with\nlasso or group lasso penalty. The algorithm uses\nMaximization-Minorization and (block) coordinate descent.\nSparse calculation and parallel computing are supported for the\ncomputational speed-up. See Hyebin Song, Garvesh Raskutti\n(2018) .", "License": "GPL-2", "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "URL": "https://arxiv.org/abs/1711.08129", "BugReports": "https://github.com/hsong1/PUlasso/issues", "Repository": "https://hsong1.r-universe.dev", "Date/Publication": "2026-02-22 02:52:20 UTC", "RemoteUrl": "https://github.com/hsong1/pulasso", "RemoteRef": "HEAD", "RemoteSha": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-23 05:48:58 UTC", "User": "root" }, "Author": "Hyebin Song [aut, cre],\nGarvesh Raskutti [aut]", "Maintainer": "Hyebin Song ", "MD5sum": "774a11db52e57d4c2e11dd99f39e8a05", "_user": "hsong1", "_type": "src", "_file": "PUlasso_3.2.6.tar.gz", "_fileid": "e020f3d835d32a1afbb795d64317c34e2b1819833b201b8db1d56351a29cba66", "_filesize": 1330702, "_sha256": "e020f3d835d32a1afbb795d64317c34e2b1819833b201b8db1d56351a29cba66", "_created": "2026-05-23T05:48:58.000Z", "_published": "2026-05-23T05:57:04.588Z", "_distro": "noble", "_jobs": [ { "job": 77501078763, "time": 214, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "7174706214" }, { "job": 77501078765, "time": 209, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7174705648" }, { "job": 77501078799, "time": 238, "config": "linux-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7174708535" }, { "job": 77501078772, "time": 210, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7174705895" }, { "job": 77501078758, "time": 256, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7174706928" }, { "job": 77501078762, "time": 395, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "7174722954" }, { "job": 77501078754, "time": 175, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7174699952" }, { "job": 77501078782, "time": 400, "config": "macos-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7174723347" }, { "job": 77500781000, "time": 305, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7174683895" }, { "job": 77501078742, "time": 163, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7174701006" }, { "job": 77501078753, "time": 216, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7174706549" }, { "job": 77501078766, "time": 136, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7174698396" }, { "job": 77501078760, "time": 340, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7174719672" } ], "_buildurl": "https://github.com/r-universe/hsong1/actions/runs/26324935689", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/hsong1/pulasso", "_commit": { "id": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "author": "Hyebin Song ", "committer": "Hyebin Song ", "message": "cran\n\ncran submission\n", "time": 1771728740 }, "_maintainer": { "name": "Hyebin Song", "email": "hps5320@psu.edu", "login": "hsong1", "description": "An assistant professor in Statistics at Penn State", "uuid": 27530098 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppEigen", "role": "LinkingTo" }, { "package": "Matrix", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 0.12.8", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "doParallel", "role": "Imports" }, { "package": "foreach", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "hsong1", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-07", "n": 3 }, { "week": "2026-08", "n": 1 } ], "_tags": [], "_stars": 7, "_contributors": [ { "user": "hsong1", "count": 6, "uuid": 27530098 } ], "_userbio": { "uuid": 27530098, "type": "user", "name": "Hyebin Song", "description": "An assistant professor in Statistics at Penn State" }, "_downloads": { "count": 254, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PUlasso" }, "_devurl": "https://github.com/hsong1/pulasso", "_searchresults": 19, "_topics": [ "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/PUlasso.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/hsong1/pulasso", "_realowner": "hsong1", "_cranurl": true, "_releases": [ { "version": "1.2", "date": "2017-12-13" }, { "version": "2.1", "date": "2018-01-03" }, { "version": "2.2", "date": "2018-02-14" }, { "version": "3.1", "date": "2018-04-07" }, { "version": "3.1.1", "date": "2018-05-15" }, { "version": "3.2.2", "date": "2019-03-04" }, { "version": "3.2.3", "date": "2019-04-28" }, { "version": "3.2.4", "date": "2021-01-17" }, { "version": "3.2.5", "date": "2023-12-18" }, { "version": "3.2.6", "date": "2026-02-16" } ], "_exports": [ "cv.grpPUlasso", "deviances", "grpPUlasso" ], "_datasets": [ { "name": "simulPU", "title": "simulated PU data", "object": "simulPU", "file": "simulPU.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "PUlasso-package", "title": "PUlasso : An efficient algorithm to solve Positive and Unlabeled(PU) problem with lasso or group lasso penalty", "topics": [ "PUlasso-package", "PUlasso" ] }, { "page": "cv.grpPUlasso", "title": "Cross-validation for PUlasso", "topics": [ "cv.grpPUlasso" ] }, { "page": "deviances", "title": "Deviance", "topics": [ "deviances" ] }, { "page": "grpPUlasso", "title": "Solve PU problem with lasso or group lasso penalty.", "topics": [ "grpPUlasso" ] }, { "page": "simulPU", "title": "simulated PU data", "topics": [ "simulPU" ] } ], "_readme": "https://github.com/hsong1/pulasso/raw/HEAD/README.md", "_rundeps": [ "cli", "codetools", "cpp11", "doParallel", "farver", "foreach", "ggplot2", "glue", "gtable", "isoband", "iterators", "labeling", "lattice", "lifecycle", "Matrix", "R6", "RColorBrewer", "Rcpp", "RcppEigen", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "PUlasso-vignette.Rmd", "filename": "PUlasso-vignette.html", "title": "PUlasso-vignette", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Basic usage of PUlasso package", "Group Penalty", "Fitting with a sparse matrix", "Optimization" ], "created": "2017-11-28 15:17:01", "modified": "2026-02-12 03:24:03", "commits": 7 } ], "_score": 5.123851640967086, "_indexed": true, "_nocasepkg": "pulasso", "_universes": [ "hsong1" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "3.2.6", "date": "2026-05-23T05:52:03.000Z", "distro": "noble", "arch": "aarch64", "commit": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "fileid": "7b092fa97d6fd420c162e65189f8f992cfb4967ac98b18e727483cddf8a88b4c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/hsong1/actions/runs/26324935689" }, { "r": "4.7.0", "os": "linux", "version": "3.2.6", "date": "2026-05-23T05:51:56.000Z", "distro": "noble", "arch": "x86_64", "commit": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "fileid": "2c2ea9e5b33493527d83925393260ff16041b33101db6eb36e4d88615dba90a0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/hsong1/actions/runs/26324935689" }, { "r": "4.6.0", "os": "linux", "version": "3.2.6", "date": "2026-05-23T05:52:28.000Z", "distro": "noble", "arch": "aarch64", "commit": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "fileid": "4bf62359e050ef4affd7307cc4d700af8c6a3717d22260e31ba459d05197aaf0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/hsong1/actions/runs/26324935689" }, { "r": "4.6.0", "os": "linux", "version": "3.2.6", "date": "2026-05-23T05:52:00.000Z", "distro": "noble", "arch": "x86_64", "commit": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "fileid": "83a0e93191057c40ca0d70bd01de22592407793ec3715049df03bc98f46c3c66", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/hsong1/actions/runs/26324935689" }, { "r": "4.5.3", "os": "mac", "version": "3.2.6", "date": "2026-05-23T05:52:30.000Z", "arch": "aarch64", "commit": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "fileid": "b27eaa370ddb05564ea5c4213f6f6bbb35bbfe91b35a9d800a419226c4d0fb5a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/hsong1/actions/runs/26324935689" }, { "r": "4.5.3", "os": "mac", "version": "3.2.6", "date": "2026-05-23T05:54:05.000Z", "arch": "x86_64", "commit": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "fileid": "e6fba3219a4742e917c36e0bc57a1e084d9ed188e3fc1a72090c6bb7a78f1f5f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/hsong1/actions/runs/26324935689" }, { "r": "4.6.0", "os": "mac", "version": "3.2.6", "date": "2026-05-23T05:51:39.000Z", "arch": "aarch64", "commit": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "fileid": "74ae452090a95edceb310a67b57976d6ef21c54c346cf7e480b7cd980fa12ba9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/hsong1/actions/runs/26324935689" }, { "r": "4.6.0", "os": "mac", "version": "3.2.6", "date": "2026-05-23T05:52:56.000Z", "arch": "x86_64", "commit": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "fileid": "b758686ae044aa44b967b6655f1511fbfb948bf90f7af3dc66c008b11ab72a0b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/hsong1/actions/runs/26324935689" }, { "r": "4.6.0", "os": "wasm", "version": "3.2.6", "date": "2026-05-23T05:52:06.000Z", "arch": "emscripten", "commit": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "fileid": "6ac4297f700b66f9095fb3a6cc30d24e4b12952c3f79def384896e801f5352d0", "status": "success", "buildurl": "https://github.com/r-universe/hsong1/actions/runs/26324935689" }, { "r": "4.7.0", "os": "win", "version": "3.2.6", "date": "2026-05-23T05:51:31.000Z", "arch": "x86_64", "commit": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "fileid": "f853a8e8a7769823ec927507ef9659a783f6412d5c6dd4760cbc3d82ddbbc80e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/hsong1/actions/runs/26324935689" }, { "r": "4.5.3", "os": "win", "version": "3.2.6", "date": "2026-05-23T05:50:56.000Z", "arch": "x86_64", "commit": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "fileid": "8c25a764156abbed499fd3ac42571fae14d357e2d9394b56001694edc8aa11e4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/hsong1/actions/runs/26324935689" }, { "r": "4.6.0", "os": "win", "version": "3.2.6", "date": "2026-05-23T05:53:01.000Z", "arch": "x86_64", "commit": "2484d7652f1d4d4552ea55de9d0fb3a2f93b061c", "fileid": "d818c71510fb8c4fc0657336d45b922e904e406a09064235831791526e3f3a19", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/hsong1/actions/runs/26324935689" } ] }